PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032283m
Common NameCICLE_v10032285mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 292aa    MW: 32047.3 Da    PI: 6.6497
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032283mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.55.6e-33143200259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  Ciclev10032283m 143 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHH 200
                      8******************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-34127201IPR003657WRKY domain
SuperFamilySSF1182903.01E-28134200IPR003657WRKY domain
PROSITE profilePS5081129.712137202IPR003657WRKY domain
SMARTSM007743.2E-38142201IPR003657WRKY domain
PfamPF031069.6E-26143200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDDSSKEKSD RGQSSWKLGE PPDAGCVSYI LSEFGWNLQE HESSTSYFAA DHERSDLAGN  60
ISSSFPAETT TDGGGLTNPG RSADVSTSNP SVSSSSSEDP TEKSTGSGGK PPEIPSKARK  120
KGQKRIRQPR FAFMTKSEVD HLEDGYRWRK YGQKAVKNSP FPRSYYRCTN SKCTVKKRVE  180
RSSEDPTIVI TTYEGQHCHH TVGFPRGGLI NHEAAAFASH LTHAIPPYYY HQGVQITQET  240
PGIKQQSHEE ELIPVEAREH EPNALPEPPA LPPPTDEGLL GDIVPPGMRN R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25132199774Probable WRKY transcription factor 4
2lex_A1e-25132199774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438805.10.0hypothetical protein CICLE_v10032285mg
RefseqXP_006438806.10.0hypothetical protein CICLE_v10032285mg
RefseqXP_006438807.10.0hypothetical protein CICLE_v10032285mg
RefseqXP_006438808.10.0hypothetical protein CICLE_v10032285mg
RefseqXP_006483053.10.0PREDICTED: probable WRKY transcription factor 57
RefseqXP_006483054.10.0PREDICTED: probable WRKY transcription factor 57
RefseqXP_006483055.10.0PREDICTED: probable WRKY transcription factor 57
RefseqXP_006483056.10.0PREDICTED: probable WRKY transcription factor 57
SwissprotQ9C9831e-79WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLV4TK800.0V4TK80_9R
STRINGPOPTR_0008s09360.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49952753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.24e-67WRKY DNA-binding protein 57